hyperoxia exposures (Alion Pharmaceuticals)
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Hyperoxia Exposures, supplied by Alion Pharmaceuticals, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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1) Product Images from "Sulforaphane enriched transcriptome of lung mitochondrial energy metabolism and provided pulmonary injury protection via Nrf2 in mice"
Article Title: Sulforaphane enriched transcriptome of lung mitochondrial energy metabolism and provided pulmonary injury protection via Nrf2 in mice
Journal: Toxicology and applied pharmacology
doi: 10.1016/j.taap.2018.12.004
Figure Legend Snippet: (A) Bronchoalveolar lavage (BAL) fluid analysis determined numbers of neutrophils for inflammation and total protein concentration for vascular permeability (n = 3/group for air and 48 h O2, n = 6/group for 72h O2), and (B) activity of lactate dehydrogenase (LDH) for cytotoxicity (n = 3/group for air, n = 4–5/group for O2). (C) Hyperoxia susceptibility determined by body weight loss was indicated as percent body weight change at the end of 72 h hyperoxia or air exposure (day 18) compared to the onset of the diet (day 1, n = 3/group for air, n = 6/group for O2). Data presented as group mean±SE. Two-way ANOVA used for all statistical analyses. *, P < 0.05 vs. genotype- and diet-matched air controls. +, P < 0.05 vs. diet- and exposure-matched Nrf2+/+ mice. §, P < 0.05 vs genotype- and exposure-matched AIN group.
Techniques Used: Protein Concentration, Permeability, Activity Assay
Figure Legend Snippet: (A) Heat map from hierarchical clustering analysis depicts expression profiles of SFN-responded genes in Nrf2+/+ after 72 h hyperoxia (O2) exposure (n = 1,187, P < 0.01 with moderated t-test). Heat map for the same genes in Nrf2−/− mice were shown for comparison. Color bar indicates average expression intensity (n = 3/group) normalized to Nrf2+/+-PBS-Air group. (B) Top canonical pathways of lung genes significantly altered by SFN in air-exposed Nrf2+/+ (black bars) and in air-exposed Nrf2−/− mice (grey bars). (C) Mitochondrial oxidative phosphorylation complex is illustrated with genes (in red) that were induced by SFN treatment in Nrf2+/+ mice exposed to normoxia (room air). (D) Top diseases and bio-functions of SFN-responsive lung genes in Nrf2+/+ mice included energy metabolism such as fatty acid beta-oxidation. (E) Lung genes significantly reduced by SFN in Nrf2+/+ mice were involved in the network of organismal injury and abnormality (scores 32–41), in which key molecules such as TNF receptor associated factor 1 (Traf1) and multiple mitogen-activated protein kinase (MAPK) cascade enzymes (e.g., Map3k8) were predicted to play central roles with NF-κB. Analysis was done by Ingenuity Pathway Analysis software.
Techniques Used: Expressing, Comparison, Phospho-proteomics, Software
Figure Legend Snippet: (A) Pathway analysis for hyperoxia-responsive genes in PBS-received Nrf2+/+ mice (n= 7162 genes, P < 0.01, Moderated t-test) demonstrated p53 as a key upstream regulator for the hyperoxia-altered lung genes, which may sequentially modulate other signal transducers. (B) In Nrf2−/− mice that received PBS, O2 altered genes (n = 4,799, P < 0.01) involved predominantly in IL-17A signaling pathway, which may lead to severe neutrophil infiltration. (C) Nrf2-dependently modulated genes during hyperoxia (n = 816, P < 0.01) such as Selp and Fcgr2b may contribute to the differential lung edema between Nrf2+/+ and Nrf2−/− mice given PBS.
Techniques Used:
Figure Legend Snippet: (A) Top canonical pathways of Nrf2-dependently changed gene transcripts with PBS (top, gray bars) or SFN (bottom, black bars) pretreatment in response to hyperoxia. (B) Profile analysis classified Nrf2-dependently regulated genes by similar expression patterns. (C) Pathway analysis for SFN-responsive genes in hyperoxia-exposed Nrf2−/− mice (n= 533, P < 0.01) depicted that genes altered by SFN only in these mice (e.g., Sele, Itga5, Lif, Flnb) may stimulate cellular movement and interaction by activating cell spreading, attachment, and homing, through which SFN may exert Nrf2-independent responses against hyperoxia in Nrf2−/− mice. Analyses were done using Ingenuity Pathway Analysis and GeneSpring software.
Techniques Used: Expressing, Software
Figure Legend Snippet: Mitochondrial genome copy numbers determined by droplet digital PCR (ddPCR).
Techniques Used: Digital PCR
Figure Legend Snippet: (A) Immunohistochemical localization of voltage-dependent anion-selective channel 1 (VDAC1)/porin, a mitochondrial membrane potential marker, in lung tissue sections. Brown dots indicate VDAC1-positive cells. Representative light photomicrographs are shown (n = 3–4/group). VDAC1 localization at baseline lung (PBS/Air) is indicated by small arrows. Thick black arrows indicate areas with increased VDAC1 expression compared to genotype-matched PBS/Air. White arrows indicate areas with decreased VDAC1 compared to genotype-matched PBS/Air. SFN = sulforaphane. O2 = Hyperoxia. AV, alveoli; BR, bronchi; BV, blood vessel; PA, pulmonary artery; TB, terminal bronchiole. Bar = 100 μm. (B) Aliquots of lung cytosolic proteins were subjected for Western blotting using specific antibodies. Representative images from multiple analyses of pooled proteins (n = 3/antibody) presented. ATP5A = ATP synthase subunit alpha, mitochondrial. MT-CO1 = mitochondrially encoded cytochrome c oxidase subunit 1. SDH8 = succinate dehydrogenase subunit B. NDUFB8 = NADH dehydrogenase (Ubiquinone) 1 beta subcomplex, 8. VDAC1 = Voltage-dependent anion-selective channel 1. PPLA=Cardiac phospholamban. kDa = kilodalton. Scanned band images were quantitated by densitometry. Data presented as group mean ± SE. Two-way ANOVA used for all statistical analyses. *, P < 0.05 vs. genotype- and pretreatment-matched air controls. +, P < 0.05 vs. pretreatment- and exposure-matched Nrf2+/+ mice. §, P < 0.05 vs. genotype- and exposure-matched PBS group. (C) Aliquots of pooled lung nuclear protein (5 μg) were incubated with an end-labeled oligonucleotide probe containing antioxidant response element (ARE) consensus sequence, and gel shift analysis determined total ARE binding. Nuclear proteins (5 μg) from PBS/hyperoxia-Nrf2−/− mice were run as a negative control. Nuclear proteins were subjected for Western blot analysis using Nrf2-specific antibody and images were quantified. *, P < 0.05 vs. pretreatment-matched air controls. §, P < 0.05 vs. PBS/hyperoxia group. (D) Aliquots of pooled lung nuclear protein (5 μg) were incubated with an end-labeled oligonucleotide probe containing NF-κB consensus sequence, and gel shift analysis determined total NF-κB binding. Two shifted bands (arrow heads) indicate total DNA-NF-κB complex. Specific activity for p65 NF-κB subunit was quantified using a transcription factor ELISA. Nuclear proteins from PBS/hyperoxia-Nrf2−/− mice were used for reaction with cold probes (20 pmol addition of oligonucleotide) and for no antibody control to verify the reaction specificity. *, P < 0.05 vs. genotype- and pretreatment-matched air controls. +, P < 0.05 vs. pretreament- and exposure-matched Nrf2+/+ mice. §, P < 0.05 vs. genotype- and exposure-matched PBS group.
Techniques Used: Immunohistochemical staining, Membrane, Marker, Expressing, Western Blot, Incubation, Labeling, Sequencing, Gel Shift, Binding Assay, Negative Control, Activity Assay, Enzyme-linked Immunosorbent Assay, Control

